VolRC RAS scientific journal (online edition)
RuEn

Journal section "Breeding, selection and genetics of farm animals"

Screening of аh1 fertility haplotype In the ayrshire cattle breed in the central And northwestern regions of russia

Gladyr’ E.A., Ternovskaya O.A., Kostyunina O.V.

Volume 1, Issue 4, 2018

Gladyr’ E.A., Ternovskaya O.A., Kostyunina O.V. Screening of АH1 fertility haplotype in the Ayrshire cattle breed in the Central and Northwestern Regions of Russia. Agricultural and Livestock Technology, 2018, vol. 1, no. 4. DOI: 10.15838/alt.2018.1.4.1 URL: http://azt-journal.ru/article/28026?_lang=en DOI: 10.15838/alt.2018.1.4.1

DOI: 10.15838/alt.2018.1.4.1

Abstract   |   Authors   |   References
  1. FABA. 2018. Available at: http://www.faba.fi/ru/dairy/breeding (accessed 30.09.2018).
  2. Tulinova O.V., Vasileva E.N., Troshkin E.A., Solovey G.P., Solovey V.B. Geneticheskiy potencial ayrshirskogo skota plemennogo zavoda «Novoladozhskiy» Leningradskoy oblasti // Molochnoe i myasnoe skotovodstvo. 2015. № 5. S. 22–25.
  3. Ezhegodnik po plemennoy rabote v molochnom skotovodstve v hozyaystvah Rossiyskoy Federacii (2017 god) / I.M. Dunin [i dr.]. M.: Izd-vo FGBNU VNIIplem, 2018. 274 s.
  4. VNIIPlem. Baza dannyh nacionalnogo genofonda. Baza dannyh po nacionalnomu genofondu selskohozyaystvennyh zhivotnyh – plemennogo KRS molochnogo napravleniya produktivnosti. 2018. URL: http://xn--b1agiaphcs.xn--p1ai/grpzh (data obrascheniya 30.09.2018).
  5. VNIIPlem. Baza dannyh bykov po porodam. Ayrshirskaya poroda. 2017. URL: http://xn--b1agiaphcs.xn--p1ai/rus/files/Database/Bulls/2017/ajrshirskaya-poroda-bb.pdf (data obrascheniya 30.09.2018).
  6. Tulinova O.V. Itogi i strategiya sovershenstvovaniya populyaciy ayrshirskoy porody molochnogo skota Rossiyskoy Federacii // Seminar «Sovremennye priemy i metody selekcii v plemennom molochnom skotovodstve». SPb., 2017. 37 s. URL: http://vniigen.ru/wp-content/uploads/2018/01/Itogi-i-strategiya-sovershenstvovaniya-sovremennoy-populyacii-ayrshirskoy-porody.pdf (data obrascheniya 30.09.2018).
  7. Sivkin N.V., Chinarov A.V. Konkurentnye preimuschestva otechestvennyh porod krupnogo rogatogo skota // Sb. nauch. tr. po mat-lam Nac. nauch.-prakt. konf. k yubileyu zasluzh. rabotnika sel. hoz-va, d-ra s.-h. nauk, prof. R.V. Tamarovoy, 12 oktyabrya 2017 g. «Sovremennoe sostoyanie otechestvennyh porod krupnogo rogatogo skota i perspektivy ih kachestvennogo uluchsheniya». Yaroslavl, 2017, s. 99–105.
  8. Chekmeneva N.Yu. Povyshenie geneticheskogo potenciala produktivnosti molochnogo skota ayrshirskoy porody: dis. ... d-ra s.-h. nauk. SPb. – Pushkin, 2007. 274 c.
  9. Furaeva N.S. Povyshenie effektivnosti razvedeniya molochnyh porod skota v Yaroslavskoy oblasti: dis ... d-ra s.-h. nauk. Yaroslavl, 2016. 397 c.
  10. ABA. Amerikanskaya associaciya zavodchikov ayrshirskogo skota. Available at: http://www.usayrshire.com/genetics.html (accessed 01.10.2018).
  11. CSA. Obschestvo razvedeniya ayrshirskogo krupnogo rogatogo skota Velikobritanii i Irlandii. Available at: https://www.ayrshirescs.org/ayrshires-cattle-society/animal-search (accessed 01.10.2018).
  12. Chekmeneva N.Yu., Knyazeva T.A. Introdukciya genofonda krasnyh porod Skandinavii v genealogicheskuyu strukturu molochnyh porod Rossii // Molochnoe i myasnoe skotovodstvo. 2015. № 5. S. 16–19.
  13. Chistyakova I.A. Hozyaystvenno poleznye priznaki ayrshir-golshtinskih pomesey raznyh genotipov: dis. ... kand. biol. nauk. Petrozavodsk, 2004. 177 c.
  14. Zhou L., Heringstad B., Guldbrandtsen G.Su., Meuwissen T.H.E., Svendsen M., Grove H., Nielsen U.S., Lund M.S. Genomic predictions based on a joint reference population for the Nordic Red cattle breeds. Journal of Dairy Science, 2014, vol. 97, no. 7, pp. 4485–4496. DOI:10.3168/jds.2013-7580
  15. Smirnova O.V., Telezhenko E.V. Sovremennoe sostoyanie selekcii krasnyh severoevropeyskih molochnyh porod gruppy Viking Red // Molochnoe i myasnoe skotovodstvo. 2015. № 5. S. 13–15.
  16. Olsen H.G., Hayes B.J., Kent M.P., Nome T., Svendsen M., Larsgard A.G., Lien S. Genome-wide association mapping in Norwegian Red cattle identifies quantitative trait loci for fertility and milk production on BTA12. Animal Genetics, 2011, vol. 42, rr. 466–474. DOI: 10.1111/j.1365-2052.2011.02179.x
  17. Bett R.C., Johansson K., Zonabend E., Malmfors B., Ojango J., Okeyo M., Philipsson J. Trajectories of evolution and extinction in the Swedish cattle breeds. In Proc. 9th World Congress on Genetics Applied to Livestock Production. Leipzig, 2010.
  18. Jorjani H., Jakobsen J., Nilforooshan M.A., Hjerpe E., Zumbach B., Palucci V., Durr J. Genomic evaluation of BSW populations InterGenomics: Results and deliverables. Interbull Bulletin, 2011, vol. 43, rr. 5–8.
  19. Vanraden P.M., Olson K.M., Null D.J., Sargolzaei M., Winters M., van Kaam J.B.C.H.M. Reliability increases from combining 50,000- and 777,000-marker genotypes from four countries. Interbull Bulletin, 2012, vol. 46, rr. 75–79.
  20. Telezhenko E.V. Selekciya na rentabilnost, ili kakie korovy nam nuzhny. URL: fs-1.5mpublishing.com/.../Evgeniy-Telezhenko_Selekciya-na-rentabelnost-ili-kakie-korovy-nam-nuzhny (data obrascheniya 30.09.2018).
  21. Golohvastova S.A., Egiazaryan A.V. Genetika bykov i seksirovannoe semya // Selskohozyaystvennye vesti. 2014. № 4. S. 12–15.
  22. Heins B.J., Hansen L.B. Short communication: Fertility, somatic cell score, and production of Normande × Holstein, Montbéliarde × Holstein, and Scandinavian Red × Holstein crossbreds versus pure Holsteins during their first 5 lactations. Journal of Dairy Science, 2012, vol. 95, iss. 2, rr. 918–924. DOI: 10.3168/jds.2011-4525
  23. Cooper T.A., Wiggans G.R., VanRaden P.M., Hutchison J.L., Cole J.B., Null D.J. Genomic evaluation of Ayrshire dairy cattle and new haplotypes affecting fertility and stillbirth in Holstein, Brown Swiss and Ayrshire breeds. JAM, 2013, T206, r. 1.
  24. Venhoranta H., Pausch H., Flisikowski K., Wurmser C., Taponen J., Rautala H., Kind A., Schnieke A., Fries R., Lohi H., Andersson M. In frame exon skipping in UBE3B is associated with developmental disorders and increased mortality in cattle. BMC Genomics, 2014, vol. 15, pp. 890–898. DOI:10.1186/1471-2164-15-890
  25. Null D.J., Hutchison J.L., Bickhart D.M., VanRaden P.M., Cole J.B. Discovery of a haplotype affecting fertility in Ayrshire dairy cattle and identification of a putative causal variant. Journal of Dairy Science, 2017, vol. 100 [Suppl. 2], no. 199 [abstr. 205], p. 1. Available at: https://m.adsa.org/2017/abs/t/70060
  26. Guarini A.R., Kroezen V., Miglior F., Lourenco D.A.L., Brito L.F., Sargolzaei M. Estimating the Impact of Deleterious Recessive Haplotypes AH1 and AH2 on Reproduction in Ayrshire Cattle. Plant and Animal Genome XXVI Conference, 2018, P0482, r. 1.
  27. Cole J.B., Van Raden P.M., Null D.J., Hutchison J.L., Cooper T.A., Hubbard S.M. Haplotype tests for recessive disorders that affect fertility and other traits. AIP Research Report Genomic3 [09-13]. Updated Nov. 24, 2017. Available at: https://aipl.arsusda.gov/reference/recessive_haplotypes_ARR-G3.html. DOI: 10.1371/journal.pone.0054872
  28. Zinoveva N., Strekozov N., Eskin G., Turbina I., Yanchukov I. Monogennye nasledstvennye defekty i ih rol v vosproizvodstve // Zhivotnovodstvo Rossii. 2015. № 6. S. 30–31.
  29. Zinoveva N.A. Gaplotipy fertilnosti golshtinskogo skota // Selskohozyaystvennaya biologiya. 2016. T. 51. № 4. S. 423–435. DOI: 10.15389/agrobiology.2016.4.423rus
  30. Romanenkova O.S. Issledovanie polimorfizmov v genah APAF1, SMC2 i GART, associirovannyh s gaplotipami fertilnosti HH1, HH3 i HH4 golshtinskogo i golshtinizirovannogo krupnogo rogatogo skota: dis. ... kand. biol. nauk. Dubrovicy, 2016. 108 c.
  31. Van Raden P.M., Olson K.M., Null D.J., Hutchison J.L. Harmful recessive effects on fertility detected by absence of homozygous haplotypes. Journal of Dairy Science, 2011, vol. 94, no. 12, pp. 6153–6161. DOI: 10.3168/jds.2011-4624
  32. Schwarzenbacher H., Burgstaller J., Seefried F.R., Wurmser C., Hilbe M., Jung S., Fuerst C., Dinhopl N., Weissenböck H., Fuerst-Waltl B., Dolezal M., Winkler R., Grueter O., Bleul U., Wittek T., Fries R., Pausch H. A missense mutation in TUBD1 is associated with high juvenile mortality in Braunvieh and Fleckvieh cattle. BMC Genomics, 2016, vol. 25, no. 14, pp. 400–412. DOI: 10.1186/s12864-016-2742-y
  33. Sonstegard T.S., Cole J.B., Van Raden P.M., Van Tassell C.P., Null D.J., Schroeder S.G., Bickhart D., McClure M.C. Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle. PLoS ONE, 2013, vol. 8, no. 1, pp. 1–6. DOI: 10.1371/journal.pone. 0054872.t003
  34. Van Raden P., Null D., Hutchison J., Bickhart D., Schroeder S. Jersey haplotype 2 (JH2). Changes to evaluation system (August 2014). Available at: https://www.cdcb.us/ reference/changes/eval1408.htm (accessed 12.08.2015).
  35. Pausch H., Schwarzenbacher H., Burgstaller J., Flisikowski K., Wurmser C., Jansen S., Jung S., Schnieke A., Wittek T., Fries R. Homozygous haplotype deficiency reveals deleterious mutations compromising reproductive and rearing success in cattle. BMC Genomics, 2015, vol.16, no. 312, pp. 1–13. DOI: 10.1186/s12864-015-1483-7
  36. Fritz S., Capitan A., Djari A., Rodriguez S.C., Barbat A., Baur A., Grohs C., Weiss B., Boussaha M., Esquerré D., Klopp C., Rocha D., Boichard D. Detection of haplotypes associated with prenatal death in dairy cattle and identification of deleterious mutations in GART, SHBG and SLC37A2. PLoS One, 2013, vol. 8, no. 6, pp. 1–8. DOI: 10.1371/journal.pone.0065550
  37. Kadri N.K., Sahana G., Charlier C., Iso-Touru T., Guldbrandtsen B., Karim L., Nielsen U.S., Panitz F., Aamand G.P., Schulman N., Georges M., Vilkki J., Lund M.S., Druet T. A 660-Kb deletion with antagonistic effects on fertility and milk production segregates at high frequency in Nordic Red cattle: additional evidence for the common occurrence of balancing selection in livestock. PLoS Genetics, 2014, vol. 10, no. 1, pp. 1–11. DOI: 10.1371/journal.pgen.1004049
  38. Storlien H. Effekt av AH1 på dødfødsler og tidlig utrangering av kalv hos NRF. NMBU, 2018, 54 p. Available at: https://brage.bibsys.no/xmlui/bitstream/handle/11250/2559010/Storlien2018%20.pdf?sequence=1&isAllowed=y
  39. Chen W.-H., Lu G., Chen X., Zhao X.-M., Bork P. OGEE v2: an update of the online gene essentiality database with special focus on differentially essential genes in human cancer cell lines. Nucleic Acids Research, 2017, vol. 45, pp. D940–D944. DOI: 10.1093/nar/gkw1013
  40. Taylor J.F., Schnabel R.D., Sutovsky P. Review: Genomics of bull fertility. Animal. The Animal Consortium, 2018, pp. 1–12. DOI: 10.1017/S1751731118000599
  41. Cole J.B., Null D.J., Van Raden P.M. Phenotypic and genetic effects of recessive haplotypes on yield, longevity, and fertility. Journal of Dairy Science, 2016, vol. 99, pp. 7274–7288. DOI: 10.3168/jds.2015-10777
  42. Mesbah-Uddin Md., Guldbrandtsen B., Iso-Touru T., Vilkki J., De Koning D.-J., Boichard D., Lund M.S., Sahana G. Genome-wide mapping of large deletions and their population-genetic properties in dairy cattle. DNA Research, 2018, vol. 25, no. 1, pp. 49–59. DOI: 10.1093/dnares/dsx037
  43. Bickhart D.M., Liu G.E. The challenges and importance of structural variation detection in livestock. Frontiers in Genetics, 2014, vol. 5, no. 37, pp. 1–14. DOI: 10.3389/fgene.2014.00037
  44. Xu L., Cole J.B., Bickhart D.M., Hou Y., Song J., Van Raden P.M., Sonstegard T.S., Van Tassell T.P., Liu G.E. Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins. BMC Genomics, 2014, vol. 15, no. 683, pp. 1–10. DOI: 10.1186/1471-2164-15-683
  45. Charlier C., Agerholm J. S., Coppieters W., Karlskov-Mortensen P., Li W., de Jong G., Fasquelle C., Karim L., Cirera S., Cambisano N., Ahariz N., Mullaart E., Georges M., Fredholm M. A deletion in the bovine FANCI gene compromises fertility by causing fetal death and brachyspina. PLoS One, 2012, vol. 7, no. 8, pp. 1–7. DOI: 10.1371/journal.pone.0043085
  46. Schutz E., Wehrhahn C., Wanjek M., Bortfeld R., Wemheuer W.E., Beck J., Brenig B. The holstein friesian lethal haplotype 5 (HH5) results from a complete deletion of TBF1M and cholesterol deficiency (CDH) from an ERV-(LTR) insertion into the coding region of APOB. PLoS One, 2016, vol. 11, no. 4, pp. 1–15. DOI: 10.1371/journal.pone.0154602
  47. Sahana G., Iso-Touru T., Wu X., Nielsen U.S., de Koning D.J., Lund M.S., Vilkki J., Guldbrandtsen B.A. 0.5-Mbp deletion on bovine chromosome 23 is a strong candidate for stillbirth in Nordic Red cattle. Genetics Selection Evolution, 2016, vol. 48, no. 35, pp. 1–12. DOI: 10.1186/s12711-016-0215-z
  48. Cooper T.A., Wiggans G.R., Null D.J., Hutchison J.L., Cole J.B. Genomic evaluation, breed identification, and discovery of a haplotype affecting fertility for Ayrshire dairy cattle. Journal of Dairy Science, 2014, vol. 97, pp. 3878–3882. DOI: 10.3168/jds.2013-7427
  49. OMIA. Available at: http://omia.org/OMIA001934/9913
  50. Venhoranta H., Pausch H., Flisikowski K., Taponen J., Fries R., Lohi H., Andersson M. The gonadal hypoplasia of Northern Finncattle and PIRM syndrome in Ayrshire breed. Reproduction in Domestic Animals, 2014, vol. 49, p. 42.
  51. Van Raden P.M., Smith L.A. Selection and mating considering expected inbreeding of future progeny. Journal of Dairy Science, 1999. vol. 82, no. 2, pp. 2771–2778. DOI:10.3168/jds.S0022-0302(99)75534-7
  52. Guarini A.R. Combining Genotypic, Phenotypic and Pedigree Information to Analyze Functional Traits in Dairy Cattle. Theses of dissertation. Guelph, Ontario, Canada, 2017. URL: https://atrium.lib.uoguelph.ca/xmlui/handle/10214/12165
  53. Rrimer3. Available at: http://bioinfo.ut.ee/primer3-0.4.0
  54. Metodicheskie rekomendacii po ispolzovaniyu metoda polimeraznoy cepnoy reakcii v zhivotnovodstve / N.A. Zinoveva [i dr.]. Dubrovicy, 1998. 47 s.
  55. CDN. Managing recessives & haplotypes. GENETICS 101, 2016. Available at: https://www.holstein.ca/PublicContent/PDFS/Genetics101_SeptOct16.pdf (accessed 05.09.2018).
  56. U.S. ABA. Ayrshire Sires Identified As Haplotype Carriers (updated August. 2018). Available at: http://www.usayrshire.com/genetics.html (accessed 01.10.2018).
  57. Kovalyuk N.V., Machulskaya E.V., Sacuk V.F., Shahnazarova Yu.Yu. Novaya test-sistema dlya vyyavleniya polimorfizma alleley gena UBE3B krupnogo rogatogo skota ayrshirskoy porody // Sb. nauch. tr. Severo-Kavkaz. nauch.-issled. in-ta zhivotnovodstva, Krasnodar: FGBNU SKNIIZh, 2017. T. 6. № 3. S. 12–16.